During the Cup Mode the statistics of scores and assists have been added.Match settings in Exhibition Mode now include the choice of uniforms, extended period, penalty shoot-out and golden goal.The choice of match length has been widen to 30 minutes in spaces of 5.Three difficulty levels instead of five: easy, medium and hard.Squads have been updated to exactly reflect 1998 FIFA World Cup squads, the number of players in line-ups has been extended to 22 as well.The appearance of goals and nets has been changed.Some home, away and goalkeepers kits have been updated (including the All Star teams).Whole look of the game is less vivid in order to increase the level of realism.The most significant differences from the original are: The major changes and improvements have been focused on graphic and statistical updates rather than on engine itself. The Japanese release, Winning Eleven 3 was re-released in 1999 as Winning Eleven 3: Final Ver. Training: practice of shooting free kicks and corner kicks with a selected team.

In case of a draw, they undergo sudden death round.

Penalty Kick Mode: two teams take a five penalty kicks to select the winner.

All Star Match: a friendly match game between the World Stars Players and European Stars Players.

It is also possible to try to qualify for the World Cup. Konami Cup was the one with the more adjustable settings like the number of teams and tournament basis. This mode also included local cups like European Cup, Asian Cup, African Cup, North American Cup and South American Cup, each based on knockout-stage conditions.

Cup Mode: mainly focused on emulation of FIFA World Cup with the real group draw as in the 1998 FIFA World Cup.

League Mode: 16 international teams participate in league playing either half or full season with a free choice of teams.

Computer versus computer option was available as well. It was also possible to play with another player or with computer against computer.

Exhibition Mode: a friendly match game against computer or another player with a choice of difficulty, stadium, weather and match length and time of a match.

Modes existing in previous version have been developed and the two new have been added.

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